Concept Index

• auxiliary programs: Output
• auxiliary programs: Installing wcd
• clone: Examples
• cluster table: Output
• constraint: Doing clustering
• constraint: Format of input files
• distance function choice: Doing clustering
• distance function choice: Description
• distance function choice: Examples
• distance function parameters: Doing clustering
• dump: Output
• extended format of cluster table: Output
• fasta2sary: Doing clustering
• format, output: Output
• heuristic: Technical manual
• heuristic: Doing clustering
• installing: Installing wcd
• merging: Examples
• MPI: Installing wcd
• MPI: Output
• MPI: Examples
• MPI, installation: Installing wcd
• orientation: Output
• orientation: Technical manual
• output: Doing clustering
• parallelisation: Examples
• parallelisation: Output
• PTHREADS: Installing wcd
• PTHREADS: Examples
• Pthreads: Output
• Pthreads, installation: Installing wcd
• range: Doing clustering
• recluster, de novo: Examples
• recluster, from a coarser cluster: Refining clusters
• reverse complement: Output
• shared memory processor: Output
• SMP: Output
• stackPack: wcd inside stackPACK
• stackPACK: Installing wcd
• suffix: Doing clustering
• suffix, using fasta2sary: Output
• testing: Testing
• threshold: Doing clustering
• window length: Doing clustering
• word length: Doing clustering