6 Conclusion

Any technical questions on the use of Genesis should be sent to genesis@bioinf.wits.ac.za.

6.1 Literature cited

• G Abraham, M. Inouye (2014). Fast principal component analysis of large-scale genome-wide data. PLoS One 9(4) p. e93766, doi:10.1371/journal.pone.0093766
• Alexander, D. H., Novembre, J., and Lange, K. (2009). Fast model-based estimation of ancestry in unrelated individuals. Genome Research, 19(9), 1655–64. doi:10.1101/gr.094052.109
• Jakobsson, M., and Rosenberg, N. A. (2007). CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23(14), 1801–1806.
• Patterson, N., Price, A. L., and Reich, D. (2006). Population structure and eigenanalysis. PLoS Genetics, 2(12), e190. doi:10.1371/journal.pgen.0020190
• Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155(2), 945–59.
• Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ & Sham PC (2007) PLINK: a toolset for whole-genome association and population-based linkage analysis. American Journal of Human Genetics, 81.
• S. Purcell and C. Chang 2014. PLINK. https://www.cog-genomics.org/plink2
• Xiuwen Zheng, David Levine, Jess Shen, Stephanie M. Gogarten, Cathy Laurie, Bruce S. Weir. A High-performance Computing Toolset for Relatedness and Principal Component Analysis of SNP Data. Bioinformatics 2012; doi:10.1093/bioinformatics/bts606

6.2 Copyright

Copyright (C) 2014, Robert W Buchmann, University of the Witwatersrand

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program. If not, see http://www.gnu.org/licenses/