Download the EvoDB database:
- EvoDB 1.0 complete nucleotide alignments, evolutionary rate profiles (M2a only) and phylogenetic trees and data (198MB tar.gz file).
- See release notes. for more details about this database.
- In addition we provide a python script evodb_get.py for retreiving sequences and data from the uncompressed database files.
- EvoDB is also used by the FIRE algorithm to infer protein domain functions.
Ndhlovu,A., Durand,P.M., and Hazelhurst,S. (2015) EvoDB: a database of evolutionary rate profiles, associated protein domains and phylogenetic trees for PFAM-A. Database, 2015.
EvoDB and the FIRE algorithm
EvoDB is also used by the FIRE algorithm to infer protein domain functions.
EvoDB is licenced under the GNU Lesser General Public License.
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