| Vascular transport in plants: an advection-diffusion-reaction model of sucrose accumulation in sugarcane | Lafras Uys, Jan-Hendrik S. Hofmeyr and Johann M. Rohwer | SANBI |
| DAD: A database of antimicrobial peptides | Musa Gabere, Vijayaraghava Sundararajan, Pretorius Ashley, Saleem Adam, Alan Christoffels and Vladmir Bajic | SANBI |
| DAS Writeback Server Design | Gustavo Salazar, Nicola Mulder and Edwin Blake | UCT |
| A web interface for a statistical model that analyzes evolution of protein-coding sequences | Bonginkosi Mntungwa, Cathal Seoighe and Gaston Mazandu | UCT |
| SeqWord Genomic Island Sniffer: A tool to identify and study distributions of Horizontally transferred genetic elements among bacteria | Oliver Bezuidt, Gipsi Lima-Mendez and Oleg Reva | UP |
| Fortuna: Determining immunological relationships between proteins by integration of multiple computational immunology tools | Werner Smidt | UP |
| De novo assembly and annotation of the transcriptome of a fast-growing Eucalyptus hybrid tree | Charles Hefer, Eshchar Mizrachi, Martin Ranik, Fourie Joubert and Alexander Myburg | UP |
| Joint analysis of trait QTL and eQTL to identify plant disease resistance genes | Duncan Newman, Alexander Myburg, Jeanne Korsman and Dave Berger | UP |
| SSHscreen and SSHdb: software for microarray-based screening and sequence management of cDNA libraries. | Nanette Coetzer and Dave K. Berger | UP |
| Word Frequency based heuristics for rapid EST clustering | Dane Kennedy and Scott Hazelhurst | Wits |
| OmegaDB: A Database and Tool for Analysing Evolutionary Fingerprints | Tamarisk Scholtz, Pierre Durand, Louis Du Plessis and Scott Hazelhurst | Wits |
| In-silico detection of chokepoint enzymes in four Plasmodium species | Segun Fatumo, Clarence Yah and Ezekiel Adebiyi | Covenant University |
| Discovery: A resource for the selection of drug targets and lead compounds in malaria | Fourie Joubert, Claudia Harrison, Riaan Koegelenberg, Christiaan Odendaal and Tjaart de Beer | UP |
| Trawling the Expressed Sequence Tag (EST) database of the sexually transmitted organism Trichomonas vaginalis for open reading frame encoding alpha-mannosidase enzyme. | Sarvanen Curpen | Wits |
| Bioinformatics approaches for Cysteine proteases in disease and agricultural applications | Ozlem Tastan Bishop | Rhodes University |
| International Glossina Genome Initiative: Towards an understanding of the Glossina morsitans transcriptome | Alan Christoffels | SANBI |
| Genome linguistics approaches for data mining in metagenomic sequences | Oleg Reva | UP |
| The malarial drug target Plasmodium falciparum 1-deoxy-D-xylulose-5-phosphate reductoisomerase (PfDXR): development of a 3-D model for identification of novel, structural and functional features and for inhibitor screening | Jessica L. Goble, Matthew R. Adendorff, Tjaart A.P. de Beer, Linda L. Stephens and Gregory L. Blatch | Rhodes University |
| An evolutionary genomics approach towards analysis of genes implicated in transmission of trypanosomes between tsetse fly and mammalian host | Sarah Mwangi and Alan Christoffels | SANBI |
| Bioinformatic prediction of microRNA targets in Anopheles gambiae: Towards an understanding of parasitic control by blood-sucking mosquito | Mushal Ali, Amirtha Ganesh and Alan Christoffels | SANBI |
| Novel normalisation method for custom antibody arrays | Jean-Michel Safari Serufuri, Judit Kumuthini, Cathal Seoighe, Nicola Mulder and Jonathan Blackburn | UCT |
| An Integrative Approach to Predicting Protein- protein Interactions in Mycobacterium tuberculosis | Kenneth Opap, Gaston Mazandu, Vennu Vuppu and Nicola Mulder | UCT |
| Development of a software tool to simplify the analysis of the structure of supra-molecular protein complexes by chemical cross-linking and MS/MS | Shannon Mayne and Hugh Patterton | University of the Free State |
| An Ortholog based host-pathogen interaction prediction tool | Christiaan Jacobus Odendaal, Tjaart de Beer and Fourie Joubert | UP |
| Comparison of bacterial genomes by frequencies of signature words of 8 to 14 nucleotides | Phillip Labuschagne and Oleg Reva | UP |
| Visualisation of expression data for Plasmodium falciparum in the Discovery drug target and lead compound discovery system | Michal Jerzy Szolkiewicz | UP |
| Computational identification of putative miRNA genes and targets in the newly sequenced Eucalyptus grandis genome | Ida C. van Jaarsveld, Fourie Joubert and Alexander A. Myburg | UP |
| The spatial evolution of the bacterial chemotaxis pathway | Anna Elizabeth Johanna Yssel, Ozlem Tastan Bishop and Olec Reva | UP |
| Large Scale Sequence and Structural Analysis of Papain-like Cysteine Proteases | Matthys Kroon, Ozlem Tastan Bishop and Fourie Joubert | UP |
| An analysis pipeline for Digital Gene Expression (DGE) Profiling | Janine Silberbauer, Philip Law, Fourie Joubert and Zander Myburg | UP |
| Malarial drug targets: Cysteine protease as hemoglobinases | Fortunate Mokoena, Juan Vorster and Ozlem Tastan Bishop | UP |
| Genome annotation of the 1.2Mb region on chromosome 8p22-p23.1 harbouring the gene for keratolytic winter erythema (KWE) | Shaun Aron and Michele Ramsay | Wits |
| A statistical method for detecting copy number variation from array CGH data | Trishanta Padayachee and Mark Dowdeswell | Wits |
| Computational identification of synonymous SNPs in the human genome and their potential role in disease | Lee-Ann Wood | Wits |
| PDB-DB: A database for querying structural properties in PDB | Yair Mark, Scott Hazelhurst and Ian Sanders | Wits |